D
Acronyms and Abbreviations

ACRONYMS

ADMP Atom-centered Density Matrix Propagation

AES Atomic Emission Spectroscopy

AFM Atomic Force Microscopy

ATP Adenosine 5’-Triphosphate

AXSIA Expert Spectral Image Analysis

BEEM Ballistic Electron Emission Microscopy

BOMD Bohr-Oppenheimer Molecular Dynamics

CARS Coherent Anti-Stokes Raman Scattering

CAT Computerized Axial Tomography

CCD Charge-Coupled Device

CIF Chemical Image Fusion

CPMD Carr-Parrinello Molecular Dynamics

CT Computed Tomography

CTAB Cetyltrimethylammonium Bromide

CW Continuous Wave (Laser)

DCT Discrete Cosine Transformation

DIC Differential Interference Contrast

DICOM Digital Imaging Communications in Medicine

DIM Diffraction Imaging Microscopy

DWT Discrete Wavelet Transform



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Visualizing Chemistry: The Progress and Promise of Advanced Chemical Imaging D Acronyms and Abbreviations ACRONYMS ADMP Atom-centered Density Matrix Propagation AES Atomic Emission Spectroscopy AFM Atomic Force Microscopy ATP Adenosine 5’-Triphosphate AXSIA Expert Spectral Image Analysis BEEM Ballistic Electron Emission Microscopy BOMD Bohr-Oppenheimer Molecular Dynamics CARS Coherent Anti-Stokes Raman Scattering CAT Computerized Axial Tomography CCD Charge-Coupled Device CIF Chemical Image Fusion CPMD Carr-Parrinello Molecular Dynamics CT Computed Tomography CTAB Cetyltrimethylammonium Bromide CW Continuous Wave (Laser) DCT Discrete Cosine Transformation DIC Differential Interference Contrast DICOM Digital Imaging Communications in Medicine DIM Diffraction Imaging Microscopy DWT Discrete Wavelet Transform

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Visualizing Chemistry: The Progress and Promise of Advanced Chemical Imaging EDXS Energy-dispersive X-ray Spectroscopy EELS Electron Energy Loss Spectroscopy EM Electron Microscopy ENVI Environment for Visualizing Images FCS Fluorescence Correlation Spectroscopy FT Fourier Transform fMRI Functional Magnetic Resonance Imaging FTIR Fourier Transform Infrared Spectroscopy GFP Green Fluorescent Protein GID Global Image Database GISAXS Grazing Incidence Small-angle X-ray Scattering GMR Giant Magnetoresistivity GRIN Gradient Refractive Index GUI Graphical User Interface HPLC High-performance Liquid Chromatography ICS Indosyanine Green IETS Inelastic Electron Tunneling Spectroscopy IXS Inelastic X-ray Scattering IR Infrared LCLS Linear Coherent Light Source LDL Low-density Lipoprotein LED Light-emitting Diode LEEM Low-energy Electron Microscopy MALDI Matrix-assisted Laser Desorption/Ionization MCM-41 Mobile Crystalline Material-41 MCR Multivariate Curve Resolution MD Molecular Dynamics ME Matrix-enhanced MFM Magnetic Force Micrscopy MI Multivariate Image MPM Multiphoton Microscopy MRI Magnetic Resonance Imaging MS Mass Spectroscopy MVA Multivariate Analysis NEXAFS Near-edge X-ray Absorption Fine Structure (Spectroscopy) NIBIB National Institute of Biomedical Imaging and Bioengineering

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Visualizing Chemistry: The Progress and Promise of Advanced Chemical Imaging NIGMS National Institute of General Medical Sciences NIH National Institutes of Health NIR Near Infrared NMR Nuclear Magnetic Resonance NRS Nuclear Resonant Scattering NSOM Near-field Scanning Optical Microscopy PACS Picture Archiving and Communication Systems PCA Principal Component Analysis PDB Protein Data Bank PEEM Photoemission Electron Microscopy PESTM STM Photoemission Spectroscopy PET Positron Emission Tomography PrP Prion Protein RFP Red Fluorescent Protein RGB Red, Green, Blue ROI Region of Interest RIXS Resonant Inelastic X-ray Scattering SAXS Small-angle X-ray Scattering SEM Scanning Electron Microscopy SERS Surface-enhanced Raman Scattering SHG Second Harmonic Generation SIMS Secondary Ion Mass Spectrometry SPM Scanning Probe Microscopy SQUID Superconducting Quantum Interference Device STEM Scanning Transmission Electron Microscopy STM Scanning Tunneling Microscopy STXM Scanning Transmission X-ray Microscopy SXES Soft X-ray Emission Spectroscopy TEM Transmission Electron Microscope TERS Tip-enhanced Ramen Spectroscopy THG Third Harmonic Generation THz Terahertz TOF Time of Flight TXM Full-field X-ray Microscopy UV Ultraviolet WAXS Wide-angle X-ray Scattering WT Wavelet Transform

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Visualizing Chemistry: The Progress and Promise of Advanced Chemical Imaging XAS X-ray Absorption Spectroscopy XMCD X-ray Magnetic Circular Dichroism XPCS X-ray Photon Correlation Spectroscopy XPS X-ray Photoemission Spectroscopy XTM X-ray Tomography UNIT ABBREVIATIONS Å angstrom (length) amu atomic mass unit (atomic size) cm centimeter (length) Hz, MHz, THz hertz, megahertz, terahertz (frequency) Da, kDa dalton, kilodalton (molecular size) eV, keV electronvolt, kiloelectronvolt (energy) K kelvin (temperature) MB megabyte mm millimeter (length) mW milliwatt (power) nm nanometer (length) T tesla (magnetic strength) µm micrometer or micron (length)

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