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List of Websites That Lead Principal Investigators of NPGI Grants Reported as the Top Five Websites Used for NPGI Research



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F List of Websites That Lead Principal Investigators of NPGI Grants Reported as the Top Five Websites Used for NPGI Research 

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aPPendix f  Number of PIs Who Reported It as One of the Website Top Five Websites http://www.ncbi.nlm.nih.gov/ 120 http://www.arabidopsis.org/a 56 http://www.tigr.org 51 http://www.gramene.org 37 a http://www.maizegdb.orga 26 http://wheat.pw.usda.gov/GG2/index.shtmla 21 http://compbio.dfci.harvard.edu/tgi/ 12 http://www.plantgdb.org 10 http://www.jgi.doe.gov/ 9 http://signal.salk.edu 8 http://www.bioinfo.wsu.edu/gdra 7 http://www.genome.arizona.edu 7 http://www.google.com/ 7 http://www.maizesequence.org 7 http://expasy.org/ 6 http://www.ars-grin.gov/ 6 http://www.chromdb.org 6 http://www.comparative-legumes.orga 6 http://www.plantgenomics.iastate.edu/maize/ 6 http://www.plexdb.org/ 6 http://www.sgn.cornell.edu/a 6 IISI Web of Knowledge 6 http://mpss.udel.edu/ 5 http://www.ebi.ac.uk/ 5 http://www.medicago.org/ 5 http://www.softberry.com/berry.phtml 5 http://magi.plantgenomics.iastate.edu 4 http://soybase.agron.iastate.edu/ 4 http://compgenomics.ucdavis.edu/ 3 http://dendrome.ucdavis.edu/a 3 http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi 3 http://maswheat.ucdavis.edu/ 3 http://mips.gsf.de/ 3 http://www.biosci.ohio-state.edu/pcmb/Facilities/abrc/abrchome.htm 3 http://www.cazy.org/ 3

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aPPendix f  Number of PIs Who Reported It as One of the Website Top Five Websites http://www.geneontology.org/ 3 http://www.genome.clemson.edu 3 http://www.panzea.org/ 3 https://www.genevestigator.ethz.ch/ 3 http://asrp.cgrb.oregonstate.edu 2 http://bioinformatics.med.yale.edu/rc/overview.jspx 2 http://cggc.agtec.uga.edu/ 2 http://cgpdb.ucdavis.edu/ 2 http://harvest.ucr.edu/ 2 http://microrna.sanger.ac.uk/ 2 http://rgp.dna.affrc.go.jp 2 http://virtualplant.org 2 http://www.agcol.arizona.edu/pave/cotton/ 2 http://www.bar.utoronto.ca/ 2 http://www.broad.mit.edu/annotation/fgi/ 2 http://www.ccrc.uga.edu/~mao/cellwall/main.htm 2 http://www.genome.jp/kegg/ 2 http://irri.org/ 2 http://www.maizearray.org/ 2 http://www.phytozome.net/sorghum 2 http://www.plantgenome.uga.edu 2 http://www.pseudomonas-syringae.org/ 2 http://www.sciencemag.org/ 2 http://www.shigen.nig.ac.jp/rice/oryzabase/top/top.jsp 2 http://www.tomatomap.net/ 2 http://www.weigelworld.org/resources/microarray/AtGenExpress/ 2 http://affymetrix.arabidopsis.info/narrays/experimentbrowse.pl 1 http://agricola.nal.usda.gov/ 1 http://aztec.stanford.edu/gfp/ 1 http://barleycap.coafes.umn.edu/a 1 http://barleypop.vrac.iastate.edu/BarleyBase/BarleyBase/ 1 http://bioweb.pasteur.fr/intro-uk.html 1 http://brassica.bbsrc.ac.uk/ 1 http://cabdirect.org/ 1 http://cdna01.dna.affrc.go.jp/cDNA/ 1 http://cellwall.genomics.purdue.edu 1

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aPPendix f  Number of PIs Who Reported It as One of the Website Top Five Websites http://charge.ucdavis.edu/ 1 http://comparative-legumes.org/ 1 http://compositdb.ucdavis.edu/ 1 http://cottonevolution.info/ 1 http://depts.washington.edu/agro/ 1 http://diurnal.cgrb.oregonstate.edu/ 1 http://en.wikipedia.org/wiki/Main_Page 1 http://evolution.genetics.washington.edu/phylip.html 1 http://frontend.bioinfo.rpi.edu/applications/mfold/cgi-bin/rna-form1.cgi 1 http://fungen.org/genediscovery/ 1 http://genetics.mgh.harvard.edu/sheenweb/main_page.html 1 http://java.sun.com/j2se/1.5.0/docs/api/allclasses-noframe.html 1 http://jsp.weigelworld.org 1 http://linkage.rockefeller.edu/soft/mapmaker/ 1 http://maize-mapping.plantgenomics.iastate.edu/ 1 http://niblrrs.ucdavis.edu/ 1 http://nybg.bio.nyu.edu/vicogenta 1 http://nypg.bio.nyu.edu/orthologid 1 http://orygenesdb.cirad.fr 1 http://pfam.janelia.org 1 http://phymap.ucdavis.edu:8080/barley/index.jsp 1 http://pir.georgetown.edu 1 http://plantgenomics.biology.yale.edu/ 1 http://plantrbp.uoregon.edu/ 1 http://plantsp.genomics.purdue.edu/ 1 http://popgenome.ag.utk.edu/mdb 1 http://psbc.ucdavis.edu/home/ 1 http://rana.lbl.gov/EisenSoftware.htm 1 http://ricegaas.dna.affrc.go.jp/usr/ 1 http://rkd.ucdavis.edu/ 1 http://searchlauncher.bcm.tmc.edu/ 1 http://sorgblast3.tamu.edu/index.html 1 http://soybeangenome.siu.edu 1 http://statgen.ncsu.edu/qtlcart/ 1 http://string.embl.de/ 1 http://ted.bti.cornell.edu/ 1

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aPPendix f  Number of PIs Who Reported It as One of the Website Top Five Websites http://tilling.fhcrc.org:9366 1 http://titan.biotec.uiuc.edu/apple/background.shtml 1 http://tomet.bti.cornell.edu/ 1 http://tools.neb.com/NEBcutter2/index.php 1 http://tos.nias.affrc.go.jp 1 http://users.unimi.it/hidras/ 1 http://wheatdb.ucdavis.edu:8080/wheatdb/index.jsp 1 http://workbench.sdsc.edu 1 http://www.affymetrix.com/analysis/index.affx 1 http://www.aphis.usda.gov/ 1 http://www.arabidopsisthaliana.com/ 1 http://www.avrdc.org/ 1 http://www.bio.purdue.edu/people/faculty/gelvin/gelvinweb/main.html 1 http://www.bioinformatics.org/ 1 http://www.bioinformatics2.wsu.edu/cgi-bin/Athena/cgi/home.pl 1 http://www.blast2go.de 1 http://www.bmb.leeds.ac.uk/staff/jpk/antibodies.htm 1 http://www.brassica.info/a 1 http://www.ccrc.uga.edu/~mao/cellwall/main.htm 1 http://www.ccts.uky.edu/Research/microRNA/miRNADesignOne.aspx 1 http://www.conifergdb.org/ 1 http://www.faculty.ucr.edu/~tgirke/Cellwall/index.html 1 http://www.facultyof1000.com/search/pm/advanced 1 http://www.fgsc.net 1 http://www.fungen.org/ 1 http://www.genome.ou.edu/medicago.html 1 http://www.gmod.org/ 1 http://www.graingenes.orga 1 http://www.libraries.rutgers.edu/rul/rr_gateway/ejournals/ejournals.shtml 1 http://www.maizegenetics.net/ 1 http://www.mgel.msstate.edu/ 1 http://www.mgosdb.org/ 1 http://www.mimulusevolution.org/ 1 http://www.nature.com/index.html 1 http://www.ncgr.org/ourwork/#lis 1 http://www.nhm.ac.uk/research-curation/projects/solanaceaesource// 1

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aPPendix f  Number of PIs Who Reported It as One of the Website Top Five Websites http://www.noble.org/medicago 1 http://www.nsf.gov/ 1 http://www.oardc.ohio-state.edu/vanderknaap 1 http://www.omap.org 1 http://www.ornl.gov/sci/ipgc/ 1 a http://www.phytome.org 1 http://www.pir.uniprot.org/ 1 http://www.plantgenomeoutreach.eeob.iastate.edu/index.htm 1 http://www.pnas.org 1 http://www.premierbiosoft.com/netprimer/netprlaunch/netprlaunch.html 1 http://www.proweb.org/input/ 1 http://www.psc.edu/biomed/genedoc 1 http://www.purdue.edu/discoverypark/ionomics 1 http://www.repeatmasker.org 1 http://www.sanger.ac.uk/ 1 http://www.scabusa.org/ 1 http://www.scholar.google.com 1 http://www.sciencemuseum.org.uk/antenna/waterproofrice/ 1 http://www.tm4.org/mev.html 1 http://www.uniprot.org 1 http://www.wikipedia.org/ 1 http://www.zincfingers.org 1 http://xyloglucan.prl.msu.edu 1 https://www.fastlane.nsf.gov/fastlane.jsp 1 KIREN 1 LIS 1 VectorNTI 1 aDenotes Websites that are listed in Table 2-3 as examples of Websites that are direct results of the National Plant Genome Initiative and the Interagency Working Group on Plant Genomes’ collaborations.