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In the Light of Evolution: Volume II—Biodiversity and Extinction References Achenbach LA, Coates JD (2000) Disparity between bacterial phylogeny and physiology. ASM News 66:714–715. Ackerly DD (2003) Community assembly, niche conservatism, and adaptive evolution in changing environments. Int J Plant Sci 164:S165–S184. Ackerly DD (2004) Adaptation, niche conservatism, and convergence: Comparative studies of leaf evolution in the California chaparral. Am Nat 163:654–671. Ackerly D, Schwilk W, Webb CO (2006) Niche evolution and adaptive radiation: Testing the order of trait divergence. Ecology 87:S50–S61. Agrawal A, Redford J (2006) Poverty, Development and Biodiversity: Shooting in the Dark? (Wildlife Conservation Society, Bronx, NY), Working Paper No 26. Ahyong ST (2001) Revision of the Australian stomatopod Crustacea. Rec Aust Mus (Suppl) 26:1–326. Alcamo J, et al. (2005) Methodology for developing the MA scenarios. In Scenarios, Ecosystems and Human Well-Being, eds Carpenter SR, et al. (Island, Washington, DC), Vol 2, pp 145–172. Aldhous P, Holmes B (2007) Innovate or watch them die. New Scientist 195:6–8. Allen AP, Gillooly JF (2006) Assessing latitudinal gradients in speciation rates and biodiversity at the global scale. Ecol Lett 9:947–954. Allen AP, Brown JH, Gillooly JF (2002) Global biodiversity, biochemical kinetics, and the energetic-equivalence rule. Science 297:1545–1548. Allen AP, Gillooly JF, Savage VM, Brown JH (2006) Kinetic effects of temperature on rates of genetic divergence and speciation. Proc Natl Acad Sci USA 103:9130–9135. Allen-Wardell G, et al. (1998) The potential consequences of pollinator declines in the conservation of biodiversity and the stability of food crop yields. Conserv Biol 12:8–17. Allesina S, Pascual M (2008) Network structure, predator-prey modules, and stability in large food webs. Theor Ecol 1:55–64. Allison PA, Briggs DEG (1993) Paleolatitudinal sampling bias, Phanerozoic species diversity, and the end-Permian extinction. Geology 21:65–68.
OCR for page 348
In the Light of Evolution: Volume II—Biodiversity and Extinction Alroy J (1996) Constant extinction, constrained diversification, and uncoordinated stasis in North American mammals. Palaeogeogr Palaeoclimatol Palaeoecol 127:285–311. Alroy J (1998) Equilibrial diversity dynamics in North American mammals. In Biodiversity Dynamics: Turnover of Populations, Taxa, and Communities, eds McKinney ML, Drake JA (Columbia Univ Press, New York), pp 232–287. Alroy J (1999) The fossil record of North American mammals: Evidence for a Paleocene evolutionary radiation. Syst Biol 48:107–118. Alroy J (2000) New methods for quantifying macroevolutionary patterns and processes. Paleobiology 26:707–733. Alroy J (2001) A multispecies overkill simulation of the end-Pleistocene megafaunal mass extinction. Science 292:1893–1896. Alroy J (2004) Are Sepkoski’s evolutionary faunas dynamically coherent? Evol Ecol Res 6:1–32. Alroy J (in press) Speciation and extinction in the fossil record of North American mammals. In Ecology and Speciation, eds Butlin R, Bridle J, Schluter D (Cambridge Univ Press, Cambridge, UK). Alroy J, et al. (2001) Effects of sampling standardization on estimates of Phanerozoic marine diversification. Proc Natl Acad Sci USA 98:6261–6266. Alroy J, et al. (2008) Phanerozoic trends in the global diversity of marine invertebrates. Science 321:97–100. Altizer S, et al. (2003) Social organization and parasite risk in mammals: Integrating theory and empirical studies. Annu Rev Ecol Syst 34:517–547. Altschul SF, et al. (1990) Basic local aligment search tool. J Mol Biol 215:403–410. American Museum of Natural History (1998) Biodiversity and the Next Millennium: A Nationwide Survey (Harris, Nichols Hills, OK). AmphibiaWeb (2007) Information on Amphibian Biology and Conservation. Available at http://amphibiaweb.org/. Accessed December 16, 2007. Anderson RM, May RM (1986) The invasion persistence and spread of infectious diseases within animal and plant communities. Philos Trans R Soc London Ser B 314:533–570. Andren O, Balandreau J (1999) Biodiversity and soil functioning—from black box to can of worms? Appl Soil Ecol 13:105–108. Angiosperm Phylogeny Group II (2003) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot J Linn Soc 141:399–436. Anonymous (2006) Ecosystems and Human Well-Being. The Millennium Ecosystems Assessment (United Nations Development Programme, New York). Anstey RL (1978) Taxonomic survivorship and morphologic complexity in Paleozoic bryozoan genera. Paleobiology 4:407–418. Anstey RL (1986) Bryozoan provinces and patterns of generic evolution and extinction in the Late Ordovician of North America. Lethaia 19:33–51. Arndt SK (2006) Integrated research of plant functional traits is important for the understanding of ecosystem processes. Plant Soil 285:1–3. Arnold MJ (1997) Natural Hybridization and Evolution (Oxford Univ Press, New York). Arnold MJ (2006) Evolution Through Genetic Exchange (Oxford Univ Press, New York). Aronson RB, Precht WF (2001) White-band disease and the changing face of Caribbean coral reefs. Hydrobiologia 25:460:25–38. Aronson RB, Macintyre IG, Wapnick CM, O’Neill MW (2004) Phase shifts, alternative states, and the unprecedented convergence of two reef systems. Ecology 85:1876–1891. Asner GP, et al. (2005) Selective logging in the Brazilian Amazon. Science 310:480–482. Auster PJ (1998) A conceptual model of the impacts of fishing gear on the integrity of fish habitats. Conserv Biol 12:1198–1203.
OCR for page 349
In the Light of Evolution: Volume II—Biodiversity and Extinction Austin AT, Sala OE, Jackson RB (2006) Inhibition of nitrification alters carbon turnover in the Patagonian steppe. Ecosystems 9:1257–1265. Avise JC (1992) Molecular population structure and the biogeographic history of a regional fauna: A case history with lessons for conservation biology. Oikos 63:62–76. Avise JC (2000) Phylogeography: The History and Formation of Species (Harvard Univ Press, Cambridge, MA). Avise JC (2001) Evolving genomic metaphors: A new look at the language of DNA. Science 294:86–87. Avise JC (2002) Genetics in the Wild (Smithsonian Inst Press, Washington, DC). Avise JC (2004) Molecular Markers, Natural History, and Evolution (Sinauer, Sunderland, MA), 2nd Ed. Avise JC (2005) Phylogenetic units and currencies above and below the species level. In Phylogeny and Conservation, eds Purvis A, Gittleman JL, Brooks TM (Cambridge Univ Press, Cambridge, UK), pp 76–100. Avise JC (2006) Evolutionary Pathways in Nature: A Phylogenetic Approach (Cambridge Univ Press, Cambridge, UK). Avise JC (in press) The history, purview, and future of conservation genetics. In Conservation Biology: Evolution in Action, eds Carroll SP, Fox CW (Oxford Univ Press, Oxford). Avise JC, Ayala FJ, eds (2007). In the Light of Evolution: Volume I: Adaptation and Complex Design (Natl Acad Press, Washington, DC). Avise JC, Hamrick JL, eds (1996) Conservation Genetics: Case Histories from Nature (Chapman & Hall, New York). Avise JC, Johns GC (1999) Proposal for a standardized temporal scheme of biological classification for extant species. Proc Natl Acad Sci USA 96:7358–7363. Avise JC, Mitchell D (2007) Time to standardize taxonomies. Syst Biol 56:130–133. Avise JC, Robinson TJ (2008) Hemiplasy: A new term in the lexicon of phylogenetics. Syst Biol 57:503–507. Avise JC, Walker DW (1998) Pleistocene phylogeographic effects on avian populations and the speciation process. Proc R Soc London Ser B 265:457–463. Avise JC, Walker DW (1999) Species realities and numbers in sexual vertebrates: Perspectives from an asexually transmitted genome. Proc Natl Acad Sci USA 96:992–995. Avise JC, Walker DW, Johns GC (1998) Speciation durations and Pleistocene effects on vertebrate phylogeography. Proc R Soc London Ser B 265:1707–1712. Axelrod DI (1975) Evolution and biogeography of Madrean-Tethyan sclerophyll vegetation. Ann Missouri Bot Gard 62:280–334. Azam F, Malfatti F (2007) Microbial structuring of marine ecosystems. Nat Rev Microbiol 5:782–791. Baillie JEM, Hilton-Taylor C, Stuart SN (2004) A Global Species Assessment (International Union for Conservation of Nature, Gland, Switzerland). Baird AH, et al. (2002) Coral reef biodiversity and conservation. Science 296:1026–1028. Baldwin BG, Sanderson MJ (1998) Age and rate of diversification of the Hawaiian silver-sword alliance (Compositae). Proc Natl Acad Sci USA 95:9402–9406. Balmford A (1996) Extinction filters and current resilience: The significance of past selection pressures for conservation biology. Trends Ecol Evol 11:193–196. Balmford A, et al. (2001) Conservation conflicts across Africa. Science 291:2616–2619. Balmford A, Gaston KJ, Blyth S, James A, Kapos V (2003a) Global variation in terrestrial conservation costs, conservation benefits, and unmet conservation needs. Proc Natl Acad Sci USA 100:1046–1050. Balmford A, Green RE, Jenkins M (2003b) Measuring the changing state of nature. Trends Ecol Evol 18:326–330. Balser TC, Firestone MK (2005) Linking microbial community composition and soil processes in a California annual grassland and mixed-conifer forest. Biogeochemistry 73:395–415.
OCR for page 350
In the Light of Evolution: Volume II—Biodiversity and Extinction Balser TC, Kinzig AP, Firestone MK (2002) Linking soil microbial communities and ecosystem functioning. In The Functional Consequence of Biodiversity: Empirical Progress and Theoretical Extensions, eds Kinzig A, Pacala S, Tilman D (Princeton Univ Press, Princeton, NJ), pp 265–293. Balvanera P, et al. (2006) Quantifying the evidence for biodiversity effects on ecosystem functioning and services. Annu Rev Ecol System 9:1146–1156. Bambach RK (1983) Ecospace utilization and guilds in marine communities through the Phanerozoic. In Biotic Interactions in Recent and Fossil Benthic Communities, eds Tevesz MJS, McCall PL (Plenum, New York), pp 719–746. Bambach RK, Knoll AH, Sepkoski JJ, Jr (2002) Anatomical and ecological constraints on Phanerozoic animal diversity in the marine realm. Proc Natl Acad Sci USA 99:6854–6859. Bambach RK, Knoll AH, Wang SC (2004) Origination, extinction, and mass depletions of marine diversity. Paleobiology 30:522–542. Bambach RK, Bush AM, Erwin DH (2007) Autecology and the filling of ecospace: Key metazoan radiations. Palaeontology 50:1–22. Barber PH, Bellwood DR (2005) Biodiversity hotspots: Evolutionary origins of biodiversity in wrasses (Halichoeres: Labridae) in the Indo-Pacific and New World tropics. Mol Phylogenet Evol 35:235–253. Barber PH, Palumbi SR, Erdmann MV, Moosa MK (2000) A marine Wallace’s line? Nature 406:692–693. Barber PH, Palumbi SR, Erdmann MV, Moosa MK (2002) Sharp genetic breaks among populations of a benthic marine crustaceans indicate limited oceanic larval transport: Patterns, causes, and consequences. Mol Ecol 11:659–674. Barber PH, Erdmann MV, Palumbi SR (2006) Comparative phylogeography of three codistributed stomatopods: Origins and timing of regional lineage diversification in the coral triangle. Evolution 60:1825–1839. Barlow, Z (2008) Plight of the butterflies. Ventura County Star, January 3 (Scripps Interactive Newspaper Group, Cincinnati, OH). Barinaga M (2004) California Academy starts on the museum of its dreams. Science 304:669–670. Barnosky AD (1986) “Big game” extinction caused by Late Pleistocene climatic change: Irish elk (Megaloceros giganteus) in Ireland. Quatern Res 25:128–135. Barnosky AD, Koch PL, Feranec RS, Wing SL, Shabel AB (2004) Assessing the causes of Late Pleistocene extinctions on the continents. Science 306:70–75. Barns SM, Takala SL, Kuske CR (1999) Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment. Appl Environ Microbiol 65:1731–1737. Barraclough TG, Davies TJ (2005) Predicting future speciation. In Phylogeny and Conservation, eds Purvis A, Gittleman JL, Brooks TM (Cambridge Univ Press, Cambridge, UK), pp 400–418. Bartlett T (2007) Bugguide. Available at http://bugguide.net/node/view/15740. Bascompte J, Melian CJ, Sala E (2005) Interaction strength motifs and the overfishing of marine food webs. Proc Natl Acad Sci USA 102:5443–5447. Baum JK, Myers RA (2004) Shifting baselines and the decline of pelagic sharks in the Gulf of Mexico. Ecol Lett 7:135–145. Baum JK, et al. (2003) Collapse and conservation of shark populations in the northwest Atlantic. Science 299:389–392. Beddington JR, Agnew DJ, Clark CW (2007) Current problems in the management of marine fisheries. Science 316:1713–1716. Beja-Pereira A, et al. (2006) The origin of European cattle: Evidence from modern and ancient DNA. Proc Natl Acad Sci USA 103:8113–8118.
OCR for page 351
In the Light of Evolution: Volume II—Biodiversity and Extinction Bell CD, Donoghue MJ (2005) Phylogeny and biogeography of Valerianaceae (Dipsacales) with special reference to the South American valerians. Org Divers Evol 5:147–159. Bell T, Newman JA, Silverman BW, Turner SL, Lilley AK (2005) The contribution of species richness and composition to bacterial services. Nature 436:1157–1160. Bellwood DR, Hughes TP (2001) Regional-scale assembly rules and biodiversity of coral reefs. Science 292:1532–1534. Bellwood DR, Hughes TP, Folk C, Nystrom M (2004) Confronting the coral reef crisis. Nature 429:827–833. Bellwood DR, Hughes TP, Connolly SR, Tanner J (2005) Environmental and geometric constraints on Indo-Pacific coral reef biodiversity. Ecol Lett 8:643–651. Benton MJ (1989) Patterns of evolution and extinction in vertebrates. In Evolution and the Fossil Record, eds Allen KC, Briggs DEG (Belhaven, London), pp 218–241. Benton MJ (1993) The Fossil Record 2 (Chapman & Hall, London). Benton MJ (1995) Diversification and extinction in the history of life. Science 268:52–58. Benton MJ (1997) Models for the diversification of life. Trends Ecol Evol 12:490–495. Benton MJ, Emerson BC (2007) How did life become so diverse? The dynamics of diversification according to the fossil record and molecular phylogenetics. Palaeontology 50:23–40. Berger L, et al. (1998) Chytridiomycosis causes amphibian mortality associated with population declines in the rain forest of Australia and Central America. Proc Natl Acad Sci USA 95:9031–9036. Berkes F (2007) Community-based conservation in a globalized world. Proc Natl Acad Sci USA 104:15188–15193. Bermingham E, Moritz CC, eds (1998) Comparative phylogeography. Mol Ecol (Special Issue) 7:367–545. Bernardo J, Spotila JR (2006) Physiological constraints on organismal response to global warming: Mechanistic insights from clinally varying populations and implications for assessing endangerment. Biol Lett 2:135–139. Biju SD, Bossuyt F (2003) New frog family from India reveals an ancient biogeographical link with the Seychelles. Nature 425:711–713. Bininda-Emonds ORP (2004) The evolution of supertrees. Trends Ecol Evol 19:316–322. Bininda-Emonds ORP, et al. (2007) The delayed rise of present-day mammals. Nature 446: 507–512. Bininda-Emonds ORP, et al. (2008) Corrigendum: Delayed rise of present-day mammals. In press. Biodiversity Project (1996) Human Values and Nature Future: Americans’ Attitudes on Biological Diversity: An Analysis of Findings from a National Survey (Beldon, Russonello and Stuart, Washington, DC). Biodiversity Project (1998) Engaging the Public on Biodiversity: A Roadmap for Education and Communication Strategies (The Biodiversity Project, Madison, WI). Biodiversity Project (2002) Americans and Biodiversity: New Perspectives in 2002 (Beldon, Russonello and Stuart, Washington, DC). Birkeland C (1982) Terrestrial runoff as a cause of outbreaks of Acanthaster planci (Echinodermata: Asteroidea). Mar Biol 69:175–185. Black GA, Dobzhansky TH, Pavan C (1950) Some attempts to estimate species diversity and population density of trees in Amazonian forests. Bot Gaz 111:413–425. Blackburn TM, Cassey P, Duncan RP, Evans KL, Gaston KJ (2004) Avian extinction and mammalian introductions on oceanic islands. Science 305:1955–1958. Blackmore S (2002) Biodiversity update—progress in taxonomy. Science 298:365. Blanc JJ, et al. (2003) African Elephant Status Report 2002: An Update from the African Elephant Database (World Conservation Union/Species Survival Commission, African Elephant Specialist Group, Gland, Switzerland).
OCR for page 352
In the Light of Evolution: Volume II—Biodiversity and Extinction Blaustein AR (1994) Chicken Little or Nero’s fiddle? A perspective on declining amphibian populations. Herpetologica 50:85–97. Blomberg SP, Garland T, Ives AR (2003) Testing for phylogenetic signal in comparative data: Behavioral traits are more labile. Evolution 57:717–745. Böhning-Gaese K, Caprano T, van Ewijk K, Veith M (2006) Range size: Disentangling current traits and phylogenetic and biogeographic factors. Am Nat 167:555–567. Bonn A, Rodriguez ASL, Gaston KJ (2002) Threatened and endemic species: Are they good indicators of patterns of biodiversity on a national scale? Ecol Lett 5:733–741. Bonuso N, Bottjer DJ (2008) A test of biogeographical, environmental, and ecological effect on Middle and Late Triassic brachiopod and bivalve abundance patterns. Palaios 23:43–54. Borgerhoff Mulder M, Coppolillo P (2005) Conservation: Linking Ecology, Economics and Culture (Princeton Univ Press, Princeton, NJ). Bouchet P, Lozouet P, Maestrati P, Heros V (2002) Assessing the magnitude of species richness in tropical marine environments: Exceptionally high numbers of molluscs at a New Caledonia site. Biol J Linn Soc 75:421–436. Bowman K (2007) Global warming: Not so hot. Washington Post, August 31. Available at www.washingtonpost.com/wp-dyn/content/article/2007/08/30/AR2007083001440.html. Accessed 6/28/08. Bradford DF (1989) Allotopic distribution of native frogs and introduced fishes in high Sierra Nevada lakes of California: Implication of the negative effect of fish introductions. Copeia 1989:775–778. Bradshaw WE, Holzapfel CM (2006) Evolutionary response to rapid climate change. Science 312:1477–1478. Brashares JS, et al. (2004) Bushmeat hunting, wildlife declines, and fish supply in West Africa. Science 306:1180–1183. Brayard A, et al. (2006) The Early Triassic ammonoid recovery: Paleoclimatic significance of diversity gradients. Palaeogeogr Palaeoclimatol Palaeoecol 239:374–395. Brehm G, Homeir J, Fiedler K (2003) Beta diversity of geometrid moths (Lepidoptera: Geometridae) in an Andean montane rainforest. Divers Distrib 9:351–366. Bride I (2002) As dead as a dodo? Public understanding and support vis-à-vis biodiversity and biodiversity loss. PhD thesis (University of Kent, Canterbury, UK). Bride I (2006) The conundrum of conservation education and conservation mission. Conserv Biol 20:1337–1339. Briggs H (2006) UK butterflies: “Glimmer of hope.” Available at http://news.bbc.co.uk/2/hi/science/nature/4766917.stm. Briggs JC (1995) Global Biogeography (Elsevier, Amsterdam). Briggs JC (1999a) Coincident biogeographic patterns: Indo-West Pacific Ocean. Evolution 53:326–335. Briggs JC (1999b) Extinction and replacement in the Indo-West Pacific Ocean. J Biogeogr 26:777–783. Briggs JC (2000) Centrifugal speciation and centres of origin. J Biogeogr 27:1183–1188. Briggs JC (2002) Coral reef biodiversity and conservation. Science 296:1026–1028. Briggs JC (2003) Marine centres of origin as evolutionary engines. J Biogeogr 30:1–18. Briggs JC (2007) Marine longitudinal biodiversity: Causes and conservation. Diversity Distrib 13:544–555. Briggs J, Humphries C (2004) Early Classics. In Foundations of Biogeography, eds Lomolino MV, Sax DF, Brown JH (Univ of Chicago Press, Chicago), pp 5–266. Brodie J, Fabricius K, De’ath G, Okaji K (2005) Are increased nutrient inputs responsible for more outbreaks of crown-of-thorns starfish? An appraisal of the evidence. Mar Poll Bull 51:266–278.
OCR for page 353
In the Light of Evolution: Volume II—Biodiversity and Extinction Brooks DR, Hoberg EP (2000) Triage for the biosphere: The need and rationale for taxonomic inventories and phylogenetic studies of parasites. Comp Parasitol 67:1–25. Brooks DR, Hoberg EP (2007) How will global climate change affect parasite-host assemblages? Trends Parasitol 23:571–574. Brooks TM, Pimm SL, Oyugi JO (1999) Time lag between deforestation and bird extinction in tropical forest fragments. Conserv Biol 13:1140–1150. Brooks TM, et al. (2002) Habitat loss and extinction in the hotspots of biodiversity. Conserv Biol 16:909–923. Brossard D, Lewenstein B, Bonney R (2005) Scientific knowledge and attitude change: The impact of a citizen science project. Int J Sci Edu 27:1099–1121. Brown JH (1995) Macroecology (Univ of Chicago Press, Chicago). Brown JH (2001) Mammals on mountainsides: Elevational patterns of diversity. Glob Ecol Biogeogr 10:101–109. Bruno JF, Selig ER (2007) Regional decline of coral cover in the Indo-Pacific: Timing, extent, and subregional comparisons. PLoS ONE 2:e711. Bryant D, Burke L, McManus J, Spalding M (1998) Reefs at Risk, A Map-Based Indicator of Threats to the World’s Coral Reefs (World Resources Institute, Washington, DC), pp 1–56. Bryant PJ (2007a) Arthropods (insects, spiders, crustaceans and their relatives) of Orange County, California. Available at http://nathistoc.bio.uci.edu/Arthropods.htm. Bryant PJ (2007b) Intertidal life of Orange County, California. Available at http://nathistoc.bio.uci.edu/Intertidal.htm. Buckley LB, Jetz W (2007) Environmental and historical constrains on global patterns of amphibian richness. Proc R Soc London Ser B 274:1167–1173. Budd AF (2000) Diversity and extinction in the Cenozoic history of Caribbean reefs. Coral Reefs 19:25–35. Burke L, Maidens J (2004) Reefs at Risk in the Caribbean (World Resources Institute, Washington, DC), pp 1–80. Burke L, Selig E, Spalding M (2002) Reefs at Risk in Southeast Asia (World Resources Institute, Washington, DC), pp 1–72. Burney GS, Burney LP, Burney DA (2005) Landscape paleoecology and megafaunal extinction in southeastern New York state. Ecol Monogr 75:295–315. Burnham K, Anderson D (2002) Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach (Springer, New York). Bush AM, Bambach RK (2004) Did alpha diversity increase during the Phanerozoic? Lifting the veils of taphonomic, latitudinal, and environmental biases. J Geol 112:625–642. Bush AM, Markey MJ, Marshall CR (2004) Removing bias from diversity curves: The effects of spatially organized biodiversity on sampling standardization. Paleobiology 30: 666–686. Bush AM, Bambach RK, Daley GM (2007) Changes in theoretical ecospace utilization in marine fossil assemblages between the mid-Paleozoic and late Cenozoic. Paleobiology 33:76–97. Bush AO, Kennedy CR (1994) Host fragmentation and helminth parasites: Hedging your bets against extinction. Int J Parasitol 24:1333–1343. Butterfly Conservation (2007a). Butterflies are extremely valuable indicators of the state of the environment. Available at http://www.butterfly-conservation.org/text/36/recording_monitoring.html. Butterfly Conservation (2007b). Moths. Available at http://www.butterfly-conservation.org/text/5/moths.html. Caldeira K, Wickett ME (2005) Ocean model predictions of chemistry changes from carbon dioxide emissions to the atmosphere and ocean. J Geophys Res 110:C09S04.
OCR for page 354
In the Light of Evolution: Volume II—Biodiversity and Extinction Caldwell RL, Dingle H (1975) Ecology and evolution of agonistic behavior in stomatopods. Naturwissenschaften 62:214–222. Callaway RM, et al. (2002) Positive interactions among alpine plants increase with stress. Nature 417:844–848. Calosi P, Bilton DT, Spicer JI (2008) Thermal tolerance, acclimatory capacity and vulnerability to global climate change. Biol Lett 4:99–102. Campbell CA, Valentine JW (1977) Comparability of modern and ancient marine faunal provinces. Paleobiology 3:49–57. Cannatella DC, Vieites DR, Zhang P, Wake MH, Wake DB (in press) In The Timetree of Life, eds Hedges B, Kumar S (Oxford Univ Press, Oxford). Cardena CD, Ricklefs RR, Jimenez I, Bermingham E (2005) Is speciation driven by species diversity? Nature 438:E1–E2. Cardillo M, et al. (2004) Human population density and extinction risk in the world’s carnivores. PLoS Biol 2:909–914. Cardillo M, et al. (2005) Multiple causes of high extinction risk in large mammal species. Science 309:1239–1241. Cardillo M, Mace GM, Gittleman JL, Purvis A (2006) Latent risk and the future battlegrounds of mammal conservation. Proc Natl Acad Sci USA 103:4157–4161. Cardillo M, et al. (2008) The predictability of extinction: Biological and external correlates of decline in mammals. Proc R Soc London Ser B 275:1441–1448. Cardinale BJ, et al. (2006) Effects of biodiversity on the functioning of trophic groups and ecosystems. Nature 443:989–992. Carlquist SJ (1974) Island Biology (Columbia Univ Press, New York). Carney KM, Hungate BA, Drake BG, Megonigal JP (2007) Altered soil microbial community at elevated CO2 leads to loss of soil carbon. Proc Natl Acad Sci USA 104:4990–4995. Carpenter RC, Edmunds PJ (2006) Local and regional scale recovery of Diadema promotes recruitment of scleractinian corals. Ecol Lett 9:268–277. Carpenter SR, et al. (1998) Nonpoint pollution of surface waters with phosphorus and nitrogen. Ecol Appl 8:559–568. Carpenter SR, et al., eds (2005) Scenarios, Ecosystems and Human Well-Being. (Island, Washington, DC), Vol 2, p 560. Carr TR, Kitchell JA (1980) Dynamics of taxonomic diversity. Paleobiology 6:427–443. Carroll SB, Grenier JK, Weatherbee SD (2004) From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design (Blackwell, Malden, MA), 2nd Ed. Cassey P, Blackburn TM, Sol S, Duncan RP, Lockwood JL (2004) Global patterns of introduction effort and establishment success in birds. Proc R Soc London Ser B 271:S405–S408. Cavender-Bares J, Wilczek A (2003) Integrating micro- and macroevolutionary processes in community ecology. Ecology 84:592–597. Cavender-Bares J, Ackerly DD, Baum DA, Bazzaz FA (2004) Phylogenetic overdispersion in Floridian oak communities. Am Nat 163:823–843. Cavender-Bares J, Keen A, Miles B (2006) Phylogenetic structure of Floridian plant communities depends on taxonomic and spatial scale. Ecology 87:109–122. Ceballos G, Ehrlich PR (2002) Mammal population losses and the extinction crisis. Science 296:904–907. Center for International Earth Science Information Network, Centro Internacional de Agricultura Tropical (2005) Gridded Population of the World Version 3 (GPWv3) [Socioeconomic Data and Applications Center (SEDAC), (Columbia Univ, Palisades, NY)]. Center for International Earth Science Information Network, International Food Policy Research Institute, The World Bank, Centro Internacional de Agricultura Tropical (2004) Global Rural-Urban Mapping Project (GRUMP), Alpha Version: Urban Extents [Socioeconomic Data and Applications Center (SEDAC) (Columbia Univ, Palisades, NY)].
OCR for page 355
In the Light of Evolution: Volume II—Biodiversity and Extinction Chan KMA, Moore BR (2005) SYMMETREE: Whole-tree analysis of differential diversification rates. Bioinformatics 21:1709–1710. Chan KMA, Shaw MR, Cameron DR, Underwood EC, Daily GC (2006) Conservation planning for ecosystem services. PLoS Biol 4:2138–2152. Chan KMA, et al. (2007) When agendas collide: Human welfare and biological conservation. Conserv Biol 21:59–68. Chanderbali AS, van der Werff H, Renner SS (2001) Phylogeny and historical biogeography of Lauraceae: Evidence from the chloroplast and nuclear genomes. Ann Missouri Bot Gard 88:104–134. Chao A, Chazdon RL, Colwell RK, Shen T (2005) A new statistical approach for assessing similarity of species composition with incidence and abundance data. Ecol Lett 8:148–159. Chapin M (2004) A challenge to conservationists. World Watch Mag 2004:17–31. Chave J, Chust G, Thébaud C (2007) The importance of phylogenetic structure in biodiversity studies. In Scaling Biodiversity, eds Storch D, Marquet P, Brown JH (Cambridge Univ Press, Cambridge, UK), pp 151–167. Chen S-Y, et al. (2006) Origin, genetic diversity, and population structure of Chinese domestic sheep. Gene 376:216–223. Chen ZQ, Kaiho K, George AD (2005) Early Triassic recovery of the brachiopod faunas from the end-Permian mass extinction: A global review. Palaeogeogr Palaeoclimatol Palaeoecol 224:270–290. Choudary A, Dick TA (2000) Richness and diversity of helminth communities in tropical freshwater fishes: Empirical evidence. J Biogeogr 27:935–956. Chown SL (1997) Speciation and rarity: Separating cause from consequence. In The Biology of Rarity, eds Kunin WE, Gaston KJ (Chapman & Hall, London), pp 91–109. Chown SL, Gremmen NJM, Gaston KJ (1998) Ecological biogeography of Southern Ocean islands: Species-area relationships, human impacts, and conservation. Am Nat 152: 562–575. Christensen V, et al. (2003) Hundred-year decline of North Atlantic predatory fishes. Fish Fisheries 4:1–24. Ciampaglio CN (2002) Determining the role that ecological and developmental constraints play in controlling disparity: Examples from the crinoid and blastozoan fossil record. Evol Dev 4:170–188. Ciampaglio CN (2004) Measuring changes in articulate brachiopod morphology before and after the Permian mass extinction event: Do developmental constraints limit morphological innovation? Evol Dev 6:260–274. Cifelli RL, Gordon CL (2007) Recrowning mammals. Nature 447:918–920. Clack JA (2002) Gaining Ground (Indiana Univ Press, Bloomington, IN). Clark JA, May RM (2002) Taxonomic bias in conservation research. Science 297:191–192. Clark KR, Ainsworth M (1993) A method of linking multivariate community structure to environmental variables. Mar Ecol Prog Ser 92:205–219. Clavero M, Garcia-Berthou E (2005) Invasive species are a leading cause of animal extinctions. Trends Ecol Evol 20:110. Clay J (2004) World Agriculture and the Environment: A Commodity-by-Commodity Guide to Impacts and Practices (Island, Washington, DC). Clifford P, Richardson S, Hémon D (1989) Assessing the significance of the correlation between two spatial processes. Biometrics 45:123–134. Cohan F, Perry L (2007) A systematics for discovering the fundamental units of bacterial diversity. Curr Biol 17:R373–R386. Cohen KC, ed (1997) Internet Links for Science Education: Student–Science Partnerships (Plenum, New York).
OCR for page 356
In the Light of Evolution: Volume II—Biodiversity and Extinction Colman SM, Bratton JF (2003) Anthropogenically induced changes in sediment and biogenic silica fluxes in Chesapeake Bay. Geology 31:71–44. Condit R, et al. (2000) Spatial patterns in the distribution of tropical tree species. Science 288:1414–1418. Condit R, et al. (2002) Beta diversity in tropical forest trees. Science 295:666–669. Connolly SR, Miller AI (2002) Global Ordovician faunal transitions in the marine benthos: Ultimate causes. Paleobiology 28:26–40. Connolly SR, Bellwood DR, Hughes TP (2003) Indo-Pacific biodiversity of coral reefs: Deviations from a mid-domain model. Ecology 84:2178–2190. Cordeiro NJ, Howe HF (2003) Forest fragmentation severs mutualism between seed dispersers and an endemic African tree. Proc Natl Acad Sci USA 100:14052–14056. Cork S, et al. (2005) Four scenarios. Scenarios, Ecosystems and Human Well-Being, eds Carpenter SR, et al. (Island, Washington, DC), Vol 2, pp 223–296. Cowling RM, Pressey RL (2001) Rapid plant diversification: Planning for an evolutionary future. Proc Natl Acad Sci USA 98:5452–5457. Cox PM, Betts RA, Jones CD, Spall SA, Totterdell IJ (2000) Acceleration of global warming due to carbon-cycle feedbacks in a coupled climate model. Nature 408:184–187. Coyne JA, Orr HA (2004) Speciation (Sinauer, Sunderland MA). Cracraft J, Donoghue MJ, eds (2004) Assembling the Tree of Life (Oxford Univ Press, Oxford). Crame JA (2000) Evolution of taxonomic diversity gradients in the marine realm: Evidence from the composition of recent bivalve faunas. Paleobiology 26:188–214. Crame JA (2002) Evolution of taxonomic diversity gradients in the marine realm: A comparison of Late Jurassic and recent bivalve faunas. Paleobiology 28:184–207. Crampton JS, et al. (2003) Estimating the rock volume bias in paleobiodiversity studies. Science 301:358–360. Crawford JW, Harris JA, Ritz K, Young IM (2005) Towards an evolutionary ecology of life in soil. Trends Ecol Evol 20:81–87. Cribb TH, et al. (2002) The trematodes of groupers (Serranidae: Epinephelinae): Knowledge, nature and evolution. Parasitology 124:S3–S42. Cronquist A (1968) The Evolution and Classification of Flowering Plants (Houghton Mifflin, Boston). Crozier RH (1997) Preserving the information content of species: Genetic diversity, phylogeny, and conservation worth. Annu Rev Ecol Syst 28:243–268. Crutzen PJ (2002) Geology of mankind. Nature 415:23. Cunningham AA, Daszak P, Patel NG (2006) Emerging infectious-disease threats to tropical forest ecosystems. In Emerging Threats to Tropical Forests, eds Laurence WF, Peres CA (Univ of Chicago Press, Chicago), pp 149–164. Cunningham B (2003) Re-thinking objectivity. Columbia J Rev 7–8:1–13. Currie DJ, et al. (2004) Predictions and tests of climate-based hypotheses of broad-scale variation in taxonomic richness. Ecol Lett 7:1121–1134. Curry TE (2004) Public Awareness of Carbon Capture and Storage: A Survey of Attitudes Toward Climate Change Mitigation. MS thesis (Massachusetts Institute of Technology, Cambridge, MA). Curry TE, Ansolabehere S, Herzog HJ (2007) A Survey of Public Attitudes Towards Climate Change and Climate Change Mitigation Technologies in the United States: Analyses of 2006 Results (Laboratory for Energy and the Environment, Massachusetts Institute of Technology, Cambridge, MA). Cuthbert R, Parry-Jones J, Green RE, Pain DJ (2007) NSAIDs and scavenging birds: Potential impacts beyond Asia’s critically endangered vultures. Biol Lett 3:90–93. D’Hondt S, Donaghay P, Zachos JC, Luttenberg D, Lindinger M (1998) Organic carbon fluxes and ecological recovery from the Cretaceous-Tertiary mass extinction. Science 282:276–279.
OCR for page 357
In the Light of Evolution: Volume II—Biodiversity and Extinction Daily GC (1997) Nature’s Services: Societal Dependence on Natural Ecosystems (Island, Washington, DC). Daily GC, Ehrlich PR, Sanchez-Azofeifa GA (2001) Countryside biogeography: Use of human-dominated habitats by the avifauna of southern Costa Rica. Ecol Appl 11:1–13. Dale VH, Polasky S (2007) Measures of the effects of agricultural practices on ecosystem services. Ecol Econ 64:286–296. Dalton R (2006) Biodiversity: Cashing in on the rich coast. Nature 441:567–569. Dalton R (2007) Endangered collections. Nature 446:605–606. Damuth J (1993) Cope’s rule, the island rule and scaling of mammalian population density. Nature 365:748–750. Danielsen F, et al. (2005) The Asian tsunami: A protective role for coastal vegetation. Science 310:643–643. Darwin C (1859) On the Origin of Species by Means of Natural Selection (John Murray, London). Dasgupta P, Levin S, Lubchenco J (2000) Economic pathways to ecological sustainability. BioScience 50:339–345. Daszak P, Cunningham AA, Hyatt AD (2003) Infectious disease and amphibian population decline. Diversity Distributions 9:141–150. Davidson C (2004) Declining downwind: Amphibian population declines in California and historical pesticide use. Ecol Appl 14:1892–1902. Davidson C, Shaffer HB, Jennings MR (2001) Declines of the California red-legged frog: Climate, UV-B, habitat, and pesticides hypotheses. Ecol Appl 11:464–479. Davidson EH (2006) The Regulatory Genome (Academic, San Diego). Davidson EH, Erwin DH (2006) Gene regulatory networks and the evolution of animal body plans. Science 311:796–800. Davis CC, Bell CD, Mathews S, Donoghue MJ (2002) Laurasian migration explains Gondwanan disjunctions: Evidence from Malpighiaceae. Proc Natl Acad Sci USA 99:6833–6837. Davis CC, Fritsch PW, Bell CD, Mathews S (2004) High-latitude Tertiary migrations of an exclusively tropical clade: Evidence from Malpighiaceae. Int J Plant Sci 165:S107–S121. Davis CC, et al. (2005) Explosive radiation of Malpighiales suggests a mid-Cretaceous origin of rain forests. Am Nat 165:E36–E65. Davis MA (2003) Biotic globalization: Does competition from introduced species threaten biodiversity? Bioscience 53:481–489. Dayton PK, Thrush SF, Agardy MT, Hofman RJ (1995) Environmental effects of marine fishing. Aquat Conserv Mar Freshw Ecosyst 5:205–232. de Queiroz A (2002) Contingent predictability in evolution: Key traits and diversification. Syst Biol 56:917–929. de Queiroz K, Gauthier J (1992) Phylogenetic taxonomy. Annu Rev Ecol Syst 23:449–480. Dean C (2006) In the deep, deep sea, the “Yeti crab.” NY Times Science Times, March 14, F1. del Monte-Luna P, Brook BW, Zetina-Rejon MJ, Cruz-Escaloa VH (2004) The carrying capacity of ecosystems. Global Ecol Biogeog 13:485–495. DeSantis TZ, et al. (2006a) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72:5069–5072. DeSantis TZ, et al. (2006b) NAST: A multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res 34:394–399. Diamond JM (1972) Biogeographic kinetics: Estimation of relaxation times for avifaunas of Southwest Pacific islands. Proc Natl Acad Sci USA 69:3199–3203. Diaz RJ (2001) Overview of hypoxia around the world. J Environ Qual 30:275–281. Diaz S, et al. (2004) The plant traits that drive ecosystems: Evidence from three continents. J Veg Sci 15:295–304.
OCR for page 384
In the Light of Evolution: Volume II—Biodiversity and Extinction Rigby S, Milsom C (2000) Origins, evolution, and diversification of zooplankton. Annu Rev Ecol Syst 31:293–313. Rillig MC, Wright SF, Shaw MR, Field CB (2002) Artificial climate warming positively affects arbuscular mycorrhizae but decreases soil aggregate water stability in an annual grassland. Oikos 97:52–58. Rimer S (2007) At 71, physics professor is a web star. NY Times, Education Section, December 19. Available at http://www.nytimes.com/2007/12/19/education/19physics.html. Rindfuss RR, Bumpass L, St John C (1980) Education and fertility: Implications for the roles women occupy. Am Sociol Rev 45:431–447. Ripple WJ, Beschta RL (2007a) Hardwood tree decline following large carnivore loss on the Great Plains, USA. Front Ecol Environ 5:241–246. Ripple WJ, Beschta RL (2007b) Restoring Yellowstone’s aspen with wolves. Biol Conserv 138:514–519. Rivadeneira MM, Marquet PA (2007) Selective extinction of late Neogene bivalves on the temperate Pacific coast of South America. Paleobiology 33:455–468. Roach J (2003) “Bioblitz” finds 800-plus species in New York park. National Geographic News. July 8. Available at http://news.nationalgeographic.com/news/2003/07/0708_0307708_bioblitzresults.html. Accessed 6/28/08. Roberts CM, Hawkins JP (1999) Extinction risk in the sea. Trends Ecol Evol 14:241–246. Roberts CM, et al. (2002) Marine biodiversity hotspots and conservation priorities for tropical reefs. Science 295:1280–1284. Roberts RG, et al. (2001) New ages for the last Australian megafauna: Continent-wide extinction ≈46,000 years ago. Science 292:1888–1892. Robichaux DM, Cohen AC, Reaka ML, Allen D (1981) Experiments with zooplankton on coral reefs, or, will the real demersal plankton please come up? Mar Ecol 2:77–94. Robinson RA, Sutherland WJ (2002) Post-war changes in arable farming and biodiversity in Great Britain. J Appl Ecol 39:157–176. Rodriguez JP, et al. (2007) Globalization of conservation: A view from the south. Science 317:755–756. Rohde K (1982) Ecology of Marine Parasites, Australian Ecology Series, ed Heatwole H (Univ of Queensland Press, St Lucia, QLD, Australia). Rohde K (1999) Latitudinal gradients in species diversity and Rapoport’s rule revisited: A review of recent work and what parasites teach us about the causes of the gradients. Ecography 22:593–613. Rohde K (2002) Ecology and biogeography of marine parasites. Adv Mar Biol 43:1–86. Rohde RA, Muller RA (2005) Cycles in fossil diversity. Nature 434:208–210. Ron SR, Duellman WE, Coloma LA, Bustamante MR (2003) Population decline of the Jambato toad Atelopus ignescens (Anura: Bufonidae) in the Andes of Ecuador. J Herpetol 37:116–126. Roopnarine PD (2006) Extinction cascades and catastrophe in ancient food webs. Paleobiology 32:1–19. Roopnarine PD, Angielczyk KD, Wang SC, Hertog R (2007) Trophic network models explain instability of Early Triassic terrestrial communities. Proc R Soc London Ser B 274:2077–2086. Root TL, Price JT, Hall KR, Rosenzweig C, Pounds JA (2003) Fingerprints of global wild animals and plants. Nature 421:57–60. Root TL, Bishop KD, Ehrlich PR, Schneider SH, Ehrlich AH (2006) Conservation of Southeast Asian birds: The role of bird markets and avian flu. Environ Awareness 29:57–65. Rosaler J (2007). Tidepool Education Interpretive Program Annual Report 2006–2007 (Laguna Ocean Foundation, Laguna Beach, CA). Rosenberg AA, et al. (2005) The history of ocean resources: Modeling cod biomass using historical records. Front Ecol Environ 3:84–90.
OCR for page 385
In the Light of Evolution: Volume II—Biodiversity and Extinction Rosenberg AA, Swasey JH, Bowman M (2006) Rebuilding US fisheries: Progress and problems. Front Ecol Environ 4:303–308. Rosenzweig ML (1975) On continental steady states of species diversity. In Ecology and Evolution of Communities, eds Cody ML, Diamond JM (Belknap, Cambridge, MA), pp 121–140. Rosenzweig ML (1995) Species Diversity in Space and Time (Cambridge Univ Press, Cambridge, UK). Rosenzweig ML (2001) Loss of speciation rate will impoverish future diversity. Proc Natl Acad Sci USA 98:5404–5410. Rosenzweig ML, McCord RD (1991) Incumbent replacement: Evidence for long-term evolutionary progress. Paleobiology 17:202–213. Roy K, Goldberg EE (2007) Origination, extinction, and dispersal: Integrative models for understanding present-day diversity gradients. Am Nat 170(Suppl):S71–S85. Roy K, Jablonski D, Valentine JW (1996) Higher taxa in biodiversity studies: Patterns from eastern Pacific marine mollusks. Philos Trans R Soc London Ser B 351:1605–1613. Roy K, Jablonski D, Martien KK (2000) Invariant size-frequency distributions along a latitudinal gradient in marine bivalves. Proc Natl Acad Sci USA 97:13150–13155. Roy K, Jablonski D, Valentine JW (2001) Climate change, species range limits and body size in marine bivalves. Ecol Lett 4:366–370. Roy K, Jablonski D, Valentine JW (2002) Body size and invasion success in marine bivalves. Ecol Lett 5:163–167. Ruiz GM, Fofonoff PW, Carlton JT, Wonham MJ, Hines AH (2000) Invasion of coastal marine communities in North America: Apparent patterns, processes, and biases. Annu Rev Ecol Syst 31:481–531. Russell GJ, Brooks TM, McKinney MM, Anderson CG (1998) Present and future taxonomic selectivity in bird and mammal extinctions. Conserv Biol 12:1365–1376. Ryder OA (1986) Species conservation and the dilemma of subspecies. Trends Ecol Evol 1:9–10. Safina C, Rosenberg AA, Myers RA, Quinn TJ, II, Collie J (2005) US ocean fishery recovery: Staying the course. Science 309:707–708. Sakai A, Larcher W (1987) Frost Survival of Plants: Responses and Adaptation to Freezing Stress. Ecological Studies 62 (Springer, Berlin). Salihoglu B, Hofmann EE (2007) Simulations of phytoplankton species and carbon production in the equatorial Pacific Ocean 2. Effects of physical and biogeochemical processes. J Mar Res 65:275–300. Sanderson MJ, Donoghue MJ (1989) Patterns of variation in levels of homoplasy. Evolution 43:1781–1795. Sandin SA, et al. (2008) Baselines and degradation of coral reefs in the Northern Line Islands. PLoS ONE 3:e1548. Santos PF, Whitford WG (1981) The effects of microarthropods on litter decomposition in a Chihuahuan desert ecosystem. Ecology 62:654–663. Sax DF, Gaines SD (2003) Species diversity: From global decreases to local increases. Trends Ecol Evol 18:561–566. Sax DF, Gaines SD (2006) The biogeography of naturalized species and the species-area relationship: Reciprocal insights to biogeography and invasion biology. In Conceptual Ecology and Invasions Biology: Reciprocal Approaches to Nature, eds Cadotte MW, McMahon SM, Fukami T (Springer, Dordrecht), pp 449–480. Sax DF, Gaines SD, Brown JH (2002) Species invasions exceed extinctions on islands worldwide: A comparative study of plants and birds. Am Nat 160:766–783. Sax DF, et al. (2007) Ecological and evolutionary insights from species invasions. Trends Ecol Evol 22:465–471.
OCR for page 386
In the Light of Evolution: Volume II—Biodiversity and Extinction Scheffer M, Carpenter SR (2003) Catastrophic regime shifts in ecosystems: Linking theory to observation. Trends Ecol Evol 18:648–656. Scheffer M, Carpenter S, Foley JA, Folke C, Walker B (2001) Catastrophic shifts in ecosystems. Nature 413:591–596. Schimel J (1995) Ecosystem consequences of microbial diversity and community structure. In Arctic and Alpine Biodiversity: Patterns, Causes, and Ecosystem Consequences, eds Chapin FS, Koerner C (Springer, New York), pp 239–254. Schimel JP (2001) Biogeochemical models: Implicit vs. explicit microbiology. In Global Biogeochem Cycles in the Climate System, eds Schulze ED, et al. (Academic, San Diego, CA), pp 239–254. Schimel JP, Gulledge J (1998) Microbial community structure and global trace gases. Glob Change Biol 4:745–758. Schloss PD, Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71:1501–1506. Schmitt T (2007) Molecular biogeography of Europe: Pleistocene cycles and postglacial trends. Front Zool 4:11 doi:10.1186/1742-9994-4-11. Schmittner A (2005) Decline of the marine ecosystem caused by a reduction in the Atlantic overturning circulation. Nature 434:628–635. Schram FR, Muller H (2004) Catalog and Bibliography of the Fossil and Recent Stomatopoda (Backhuys, Leiden, The Netherlands). Schulman-Janiger A (2007). ACS/LA Gray Whale Census and Behavior Project. http://www.acs-la.org/GWCensus.htm. Schuyt K (2005) Opportunities for long-term financing of forest restoration in landscapes. In Forest Restoration in Landscapes: Beyond Planting Trees, eds Mansourian S, Vallauri D, Dudley N (Springer, New York), pp 161–165. Science Daily (2007). Climate change isolates Rocky Mountain butterflies. http://www.sciencedaily.com/releases/2007/08/070813171113.htm. Seabloom EW, Dobson AP, Stoms DM (2002) Extinction rates under nonrandom patterns of habitat loss. Proc Natl Acad Sci USA 99:11229–11234. Sechrest W, et al. (2002) Hotspots and the conservation of evolutionary history. Proc Natl Acad Sci USA 99:2067–2071. Seilacher A (1998) Rudists as bivalvian dinosaurs. In Bivalves, an Eon of Evolution, eds Johnston PA, Haggart JW (University of Calgary, Calgary, Canada), pp 423–436. Seilacher A (2007) Trace Fossil Analysis (Springer, Berlin). Sellner KG, Doucette GJ, Kirkpatrick GJ (2003) Harmful algal blooms: Causes, impacts and detection. J Ind Microbiol Biotechnol 30:383–406. Sepkoski JJ, Jr (1978) A kinetic model of Phanerozoic taxonomic diversity. I. Analysis of marine orders. Paleobiology 4:223–251. Sepkoski JJ, Jr (1979) A kinetic model of Phanerozoic taxonomic diversity. II. Early Phanerozoic families and multiple equilibria. Paleobiology 5:222–251. Sepkoski JJ, Jr (1981) A factor analytic description of the Phanerozoic marine fossil record. Paleobiology 7:36–53. Sepkoski JJ, Jr (1982) A compendium of fossil marine families. Milwaukee Pub Mus Contrib Biol Geol 51:1–125. Sepkoski JJ, Jr (1984) A kinetic model of Phanerozoic taxonomic diversity. III. Post-Paleozoic families and mass extinction. Paleobiology 10:246–267. Sepkoski JJ, Jr (1992) A compendium of fossil marine animal families. Milwaukee Pub Mus Contrib Biol Geol 83:1–155. Sepkoski JJ, Jr (1993) Ten years in the library: New data confirm paleontological patterns. Paleobiology 19:43–51.
OCR for page 387
In the Light of Evolution: Volume II—Biodiversity and Extinction Sepkoski JJ, Jr (1996) Patterns of Phanerozoic extinction: A perspective from global databases. In Global Events and Event Stratigraphy in the Phanerozoic, ed Walliser O (Springer, Berlin), pp 35–51. Sepkoski JJ, Jr (1997) Biodiversity: Past, present, and future. J Paleo 71:533–539. Sepkoski JJ, Jr, Miller AI (1985) Evolutionary faunas and the distribution of Paleozoic marine communities in space and time. In Phanerozoic Diversity Patterns: Profiles in Macroevolution, ed Valentine JW (Princeton Univ Press, Princeton, NJ), pp 153–190. Setälä H, McLean MA (2004) Decomposition rate of organic substrates in relation to the species diversity of soil saprophytic fungi. Oecologia 139:98–107. Sheil D, Lawrence A (2004) Tropical biologists, local people and conservation: New opportunities for collaboration. Trends Ecol Evol 19:634–638. Shellenberger M, Nordhaus T (2007) Break Through: From the Death of Environmentalism to the Politics of Possibility (Houghton Mifflin, New York). Shepherd TD, Myers RA (2005) Direct and indirect fishery effects on small coastal elasmobranchs in the northern Gulf of Mexico. Ecol Lett 8:1095–1104. Sibert J, Hampton J, Kleiber P, Maunder M (2006) Biomass, size, and trophic status of top predators in the Pacific Ocean. Science 314:1773–1776. Silva M, Downing JA (1995) The allometric scaling of density and body mass: A nonlinear relationship for terrestrial mammals. Am Nat 145:704–727. Skelton PW (1985) Preadaptation and evolutionary innovation in rudist bivalves. Spec Pap Palaeontol 33:159–173. Slingsby JA, Verboom GA (2006) Phylogenetic relatedness limits co-occurrence at fine spatial scales: Evidence from the schoenoid sedges (Cyperaceae: Schoeneae) of the Cape Floristic Region, South Africa. Am Nat 168:14–27. Smith AB (2001) Large-scale heterogeneity of the fossil record: Implications for Phanerozoic biodiversity studies. Philos Trans R Soc London Ser B 356:351–367. Smith AB (2007) Marine diversity through the Phanerozoic: Problems and prospects. J Geol Soc (London) 164:731–745. Smith AB, McGowan AJ (2007) The shape of the Phanerozoic marine palaeodiversity curve: How much can be predicted from the sedimentary rock record of western Europe? Palaeontology 50:765–774. Smith FA, et al. (2003) Body mass of Late Quaternary mammals. Ecol/Ecol Arch 84:3401–3417. Smith FDM, May RM, Harvey PH (1994) Geographical ranges of Australian mammals. J Anim Ecol 63:441–450. Smith G, Dobson AP (1992) Sexually transmitted diseases in animals. Parasitol Today 8:159–166. Smith JE, et al. (2006) Indirect effects of algae on coral: Algae-mediated, microbe-induced coral mortality. Ecol Lett 9:835–845. Smith JT, Roy K (2006) Selectivity during background extinction: Plio-Pleistocene scallops in California. Paleobiology 32:408–416. Smith KF, Sax DF, Lafferty KD (2006) Evidence for the role of infectious disease in species extinction and endangerment. Conserv Biol 20:1349–1357. Smith R, Rogo L (2005) Partnerships for the Global Taxonomy Initiative, CBD Technical Series. Available at www.bionet-intl.org/opencms/export/sites/default/resourceCentre/pdf/BioNET_SBSTTA11_Extended_Abstract.pdf. Smith TB, Bernatchez L (2008) Evolutionary change in human-altered environments. Mol Ecol 17:1–8. Sneppen K, Bak P, Flyvbjerg H, Jensen MH (1995) Evolution as a self-organized critical phenomenon. Proc Natl Acad Sci USA 92:5209–5213. Sodhi NS, et al. (2008) Measuring the meltdown: Drivers of global amphibian extinction and decline. PLoS Biol 3:e1636.
OCR for page 388
In the Light of Evolution: Volume II—Biodiversity and Extinction Soininen J, McDonald R, Hillebrand H (2007) The distance decay of similarity in ecological communities. Ecography 30:3–12. Solé R, Bascompte J (1996) Are critical phenomena relevant to large-scale evolution? Proc R Soc London Ser B 263:161–168. Solé R, Bascompte J, Manrubia SC (1996) Extinction: Bad genes or weak chaos? Proc R Soc London Ser B 263:1407–1413. Solé R, Manrubia SC, Benton M, Bak P (1997) Self-similarity of extinction statistics in the fossil record. Nature 388:764–767. Solé RV, Montoya JM, Erwin DH (2002) Recovery after mass extinction: Evolutionary assembly in large-scale biosphere dynamics. Philos Trans R Soc London Ser B 357:697–707. Soltis DE, Morris AB, McLachlan JS, Manos PS, Soltis PS (2006) Comparative phylogeography of unglaciated eastern North America. Mol Ecol 15:4261–4293. Soule ME, Terborgh J (1999) Conserving nature at regional and continental scales: A scientific program for North America. BioScience 49:809–817. Southwick EE, Southwick L, Jr (1992) Estimating the economic value of honey bees (Hymenoptera: Apidae) as agricultural pollinators in the United States. Econ Entomol 85: 621–633. Sparks TH, Carey PD (1995) The responses of species to climate over two centuries: An analysis of the Marsham phenological record, 1736–1947. J Ecol 83:321–329. Speegle B (2007) Southern Orange County Coordinated Planning Process (SOCCPP). Available at http://www.ocplanning.net/planning/soccpp/index.asp. Spehn EM, et al. (2005) Ecosystem effects of biodiversity manipulations in European grasslands. Ecol Monogr 75:37–63. Spergel B (2002) Financing protected areas. In Making Parks Work: Strategies for Preserving Tropical Nature, eds Terborgh J, van Schaik C, Davenport L, Rao M (Island, Washington, DC), pp 364–382. Sprent JFA (1992) Parasites lost? Int J Parasitol 22:139–151. Stachowicz JJ, Tilman D (2005) Species invasions and the relationships between species diversity, community saturation, and ecosystem functioning. In Species invasions: Insights into Ecology, Evolution and Biogeography, eds Sax DF, Stachowicz JJ, Gaines SD (Sinauer, Sunderland, MA), pp 41–64. Stanley S (1990) Delayed recovery and the timing of mass extinctions. Paleobiology 16:401–414. Stanley SM (2007) An analysis of the history of marine animal diversity. Paleobiology 33:1–55. Stark C, Condron LM, Stewart A, Di HJ, O’Callaghan M (2007) Influence of organic and mineral amendments on microbial soil properties and processes. Appl Soil Ecol 35:79–93. Steadman DW (2006) Extinction and Biogeography of Tropical Pacific Birds (Univ of Chicago Press, Chicago). Stebbins GL (1950) Variation and Evolution in Plants (Columbia Univ Press, New York). Stebbins GL (1974) Flowering Plants: Evolution Above the Species Level (Belknap, Cambridge, MA). Steli FG, Wells JW (1971) Diversity and age patterns in hermatypic corals. Syst Zool 20:115–126. Sterling EJ, Hurley MM, Minh LD (2006) Vietnam: A Natural History (Yale Univ Press, New Haven, CT). Steuber T (2000) Skeletal growth rates of Upper Cretaceous rudist bivalves: Implications for carbonate production and organism-environment feedbacks. Geol Soc London Spec Publ 178:21–32. Steuber T, Mitchell SF, Buhl D, Gunter G, Kasper HU (2002) Catastrophic extinction of Caribbean rudist bivalves at the Cretaceous/Tertiary boundary. Geology 30:999–1002.
OCR for page 389
In the Light of Evolution: Volume II—Biodiversity and Extinction Stevens CJ, Dise NB, Mountford JO, Gowing DJ (2004) Impact of nitrogen deposition on the species richness of grasslands. Science 303:1876–1879. Stevens GC (1992) The elevational gradient in altitudinal range: An extension of Rapoport’s latitudinal rule to altitude. Am Nat 140:893–911. Stewart B (2002) A new kind of New Yorker, one with 82 legs. NY Times July 24, A1. Still CJ, Foster PN, Schneider SH (1999) Simulating the effects of climate change on tropical montane cloud forests. Nature 398:608–610. Stokstad E (2006) Ocean policy: Fisheries bill gives bigger role to science—but no money. Science 314:1857. Stoneham G, Chaudhri V, Ha A, Strappazzon L (2003) Auctions for conservation contracts: An empirical examination of Victoria’s Bush Tender trial. Austr J Agric Resource Econ 47:477–500. Stork NE (1993) How many species are there? Biodiversity Conserv 2:215–232. Stork NE, Lyal CHC (1993) Extinction or “co-extinction” rates? Nature 366:307. Strathmann RR (1985) Feeding and nonfeeding larval development and life history evolution in marine invertebrates. Annu Rev Ecol Syst 16:339–361. Strathmann RR (1990) Why life histories evolve differently in the sea. Amer Zool 30:197–207. Strathmann RR, Strathmann MF (1982) The relationship between adult size and brooding in marine invertebrates. Am Nat 119:91–101. Stuart AJ, Kosintsev PA, Higham TFG, Lister AM (2004) Pleistocene to Holocene extinction dynamics in giant deer and woolly mammoth. Nature 431:684–690. Stuart SN, et al. (2004) Status and trends of amphibian declines and extinction worldwide. Science 306:1783–1786. Sullivan JJ, Timmins SM, Williams PA (2005) Movement of exotic plants into coastal native forests from gardens in northern New Zealand. New Zealand J Ecol 29:1–10. Sures B (2003) Accumulation of heavy metals by intestinal helminths in fish: An overview and perspective. Parasitology 126:S53–S60. Sures B (2004) Environmental parasitology: Relevancy of parasites in monitoring environmental pollution. Trends Parasitol 20:170–177. Swenson NG, et al. (2006) The problem and promise of scale dependency in community phylogenetics. Ecology 87:2418–2424. Swenson NG, Enquist BJ, Thompson J, Zimmerman JK (2007) The influence of spatial and size scale on phylogenetic relatedness in tropical forest communities. Ecology 88:1770–1780. Tang Q, et al. (2003) Decadal-scale variations of ecosystem productivity and control mechanisms in the Bohai Sea. Fish Oceanogr 12:223–235. ter Steege H, et al. (2006) Continental-scale patterns of canopy tree composition and function across Amazonia. Nature 443:444–446. Terborgh J (1999) Requiem for Nature (Island, Washington, DC). Terborgh J (2007) The green vs. the brown Amazon. NY Rev Books 54:33–35. Terborgh J, van Schaik C (2002) Why the world needs parks. In Making Parks Work: Strategies for Preserving Tropical Nature, eds Terborgh J, van Schaik C, Davenport L, Rao M (Island, Washington, DC), pp 3–14. Terborgh J, et al. (2001) Ecological meltdown in predator-free forest fragments. Science 294:1923–1926. Thomas CD, et al. (2004) Extinction risk from climate change. Nature 427:145–148. Thompson HR (1956) Distribution of distance to nth neighbour in a population of randomly distributed individuals. Ecology 37:391–394. Thuiller W (2007) Biodiversity: Climate change and the ecologist. Nature 448:550–552. Tilman D (2004) A stochastic theory of resource competition, community assembly and invasions. Proc Natl Acad Sci USA 101:10854–10861.
OCR for page 390
In the Light of Evolution: Volume II—Biodiversity and Extinction Tilman D, Lehman C (2001) Human-caused environmental change: Impacts on plant diversity and evolution. Proc Natl Acad Sci USA 98:5433–5440. Tilman D, May RM, Lehman CL, Nowak MA (1994) Habitat destruction and the extinction debt. Nature 371:65–66. Tilman D, et al. (1997) The influence of functional diversity and composition on ecosystem processes. Science 277:1300–1302. Tilman D, Cassman K, Matson P, Naylor R, Polasky S (2002) Agricultural sustainability and intensive production practices. Nature 418:671–677. Tilman D, Hill J, Lehman C (2006) Carbon-negative biofuels from low-input high-diversity grassland biomass. Science 314:1598–1600. Todd JA, et al. (2002) The ecology of extinction: Molluscan feeding and faunal turnover in the Caribbean Neogene. Proc R Soc London Ser B 269:571–577. Toomey DF (1976) Paleosynecology of a Permian plant dominated marine community. N Jahr Palaontol Abh 152:1–18. Torsvik V, Øvreås L (2002) Microbial diversity and function in soil: From genes to ecosystems. Curr Opin Microbiol 5:240–245. Torsvik V, Goksoyr J, Daae FL (1990) High diversity of DNA of soil bacteria. Appl Environ Microbiol 56:782–787. Torsvik V, Øvreås L, Thingstad TF (2002) Prokaryotic diversity—Magnitude, dynamics, and controlling factors. Science 296:1064–1066. Toumisto H, Ruokolainen K (2006) Analyzing or explaining beta diversity? Understanding the targets of different methods of analysis. Ecology 87:2697–2708. Travis JMJ (2003) Climate change and habitat destruction: A deadly anthropogenic cocktail. Proc Biol Sci 270:467–473. Tringe SG, et al. (2005) Comparative metagenomics of microbial communities. Science 308: 554–557. Trueman CNG, Field JH, Dortch J, Charles B, Wroe S (2005) Prolonged coexistence of humans and megafauna in Pleistocene Australia. Proc Natl Acad Sci USA 102:8381–8385. Tuomisto H, et al. (1995) Dissecting Amazonian biodiversity. Science 269:63–66. Turner RE, Rabalais NN, Justic D (2008) Gulf of Mexico hypoxia: Alternate states and a legacy. Environ Sci Technol 42:2323–2327. Turner WR, et al. (2007) Global conservation of biodiversity and ecosystem services. BioScience 57:868–873. Tuss P (1996) From student to scientist, an experiential approach to science education. Sci Commun 17:25–44. Twitchett RJ, Barras CG (2004) Trace fossils in the aftermath of mass extinction events. The Application of Ichnology to Palaeoenvironmental and Stratigraphic Analysis, ed McIlroy D (Geological Society, London), pp 397–418. Twitchett RJ, Wignall P (1996) Trace fossils and the aftermath of the Permo-Triassic mass extinction: Evidence from northern Italy. Palaeogeog Palaeoclimat Palaeoecol 124:137–151. United Nations Food and Agriculture Organization (2006) Global Forest Resources Assessment 2005. Available at www.fao.org/forestry/site/32038/en. Accessed 6/28/08. USA Today (2007) Endangered butterflies return home. Available at http://www.usatoday.com/tech/science/discoveries/2007-07-26-butterflies-return-home_N.htm. Valentine JW (1970) How many marine invertebrate fossil species? A new approximation. J Paleo 44:410–415. Valentine JW (1983) Seasonality: Effects in marine benthic communities. In Biotic Interactions in Recent and Fossil Benthic Communities, eds Tevesz MJS, McCall PL (Plenum, New York), pp 121–156. Valentine JW, Walker TD (1986) Diversity trends within a model taxonomic hierarchy and evolution. Physica 22:31–42.
OCR for page 391
In the Light of Evolution: Volume II—Biodiversity and Extinction Valentine JW, Jablonski D, Kidwell SM, Roy K (2006) Assessing the fidelity of the fossil record by using marine bivalves. Proc Natl Acad Sci USA 103:6599–6604. Valentine JW, Jablonski D, Krug AZ, Roy K (2008) Incumbency, diversity, and latitudinal gradients. Paleobiology 34:169–178. Valiente-Banuet A, Verdu M (2007) Facilitation can increase the phylogenetic diversity of plant communities. Ecol Lett 10:1029–1036. Van Valen L (1973) A new evolutionary law. Evol Theory 1:1–30. Van Valen L (1976) The Red Queen lives. Nature 260:575. Vane-Wright RI, Humphries CJ, Williams PH (1991) What to protect: Systematics and the agony of choice. Biol Conserv 55:235–254. Verdu M, Davila P, Garcia-Fayos P, Flores-Hernandez N, Valiente-Banuet A (2003) “Convergent” traits of Mediterranean woody plants belong to pre-Mediterranean lineages. Biol J Linn Soc 78:415–427. Vermeij GJ (2005) Invasion as expectation: A historical fact of life. In Species Invasions: Insights into Ecology, Evolution and Biogeography, eds Sax DF, Stachowicz JS, Gaines SD (Sinauer, Sunderland, MA), pp 315–339. Veron JE (1995) Corals in Space and Time: The Biogeography and Evolution of the Scleractinia (Univ of New South Wales Press, Sydney, Australia). Vieites DR, MinM-S, Wake DB (2007) Rapid diversification and dispersal during periods of global warming by plethodontid salamanders. Proc Natl Acad Sci USA 104: 19903–19907. Villier L, Korn D (2004) Morphological disparity of ammonoids and the mark of Permian mass extinctions. Science 306:264–266. Vitousek PM, Ehrlich PR, Ehrlich AH, Matson PA (1986) Human appropriation of the products of photosynthesis. Bioscience 36:368–373. Vitousek PM, Mooney HA, Lubchenco J, Melillo JM (1997) Human domination of Earth’s ecosystems. Science 277:494–499. Volkov I, Banavar JR, Hubbell SP, Maritan A (2003) Neutral theory and the relative abundance of species in ecology. Nature 424:1035–1037. Volkov I, Banavar JR, Hubbell SP, Maritan A (2007) Patterns of relative species abundance in rain forests and coral reefs. Nature 450:45–49. von Hagen KB, Kadereit JW (2001) The phylogeny of Gentianella (Gentianaceae) and its colonization of the Southern Hemisphere as revealed by nuclear and chloroplast DNA sequence variation. Org Divers Evol 1:61–79. von Hagen KB, Kadereit JW (2003) The diversification of Halenia (Gentianaceae): Ecological opportunity versus key innovation. Evolution 57:2507–2518. Voyles J, et al. (2007) Electrolyte depletion and osmotic imbalance in amphibians with chytridiomycosis. Dis Aquat Org 77:113–118. Vredenburg VT (2004) Reversing introduced species effects: Experimental removal of introduced fish leads to rapid recovery of a declining frog. Proc Natl Acad Sci USA 101:7646–7650. Vredenburg VT, et al. (2004) Patterns of habitat use and movement of Rana muscosa in the northern Sierra Nevada with comparisons to populations in the southern Sierra Nevada, with additional information on the biogeography of the species. California Department of Fish and Game Technical Report P0 185186:1–105. Vredenburg V, et al. (2007) Concordant molecular and phenotypic data delineate new taxonomy and conservation priorities for the endangered mountain yellow-legged frog. J Zool 271:361–374. Wagner PJ (1995) Diversity patterns among early gastropods: Contrasting taxonomic and phylogenetic descriptions. Paleobiology 21:410–439. Wagner PJ (2000) The quality of the fossil record and the accuracy of phylogenetic inferences about sampling and diversity. Syst Biol 49:65–86.
OCR for page 392
In the Light of Evolution: Volume II—Biodiversity and Extinction Wagner PJ, Kosnik MA, Lidgard S (2006) Abundance distributions imply elevated complexity of post-Paleozoic marine ecosystems. Science 314:1289–1292. Wake DB (2008) Are we in the midst of the sixth mass extinction? A view from the world of amphibians. Proc Natl Acad Sci USA 105(Suppl):11466–11473. Wake DB, Papenfuss TJ, Lynch JF (1991) Distribution of salamanders along elevational transects in Mexico and Guatemala. Tulane Publ Zool Bot, Suppl Publ 1:303–319. Walker TD, Valentine JW (1984) Equilibrium models of evolutionary species diversity and the number of empty niches. Am Nat 124:887–899. Walters C (2003) Folly and fantasy in the analysis of spatial catch raw data. Can J Fish Aquat Sci 60:1433–1436. Wang SC (2003) On the continuity of background and mass extinction. Paleobiology 29:455–467. Wara MW, Ravelo AC, Delaney ML (2005) Permanent El Niño-like conditions during the Pliocene warm period. Science 309:758–761. Ward P, Myers RA (2005) Shifts in open-ocean fish communities coinciding with the commencement of commercial fishing. Ecology 86:835–847. Wardle DA (1992) A comparative assessment of factors which influence microbial biomass carbon and nitrogen levels in soil. Biol Rev Camb Philos Soc 67:321–358. Waters MR, Stafford TW (2007) Redefining the Age of Clovis: Implications for the peopling of the Americas. Science 315:1122–1126. Webb CO (2000) Exploring the phylogenetic structure of ecological communities: An example for rain forest trees. Am Nat 156:145–155. Webb CO, Donoghue MJ (2005) Phylomatic: Tree assembly for applied phylogenetics. Mol Ecol Notes 5:181–183. Webb CO, Ackerly DD, McPeek M, Donoghue MJ (2002) Phylogenies and community ecology. Annu Rev Ecol Syst 33:475–505. Webb CO, Gilbert GS, Donoghue MJ (2006) Phylodiversity dependent seedling mortality, size structure, and disease in a Bornean rain forest. Ecology 87:S123–S131. Webb CO, Ackerly DD, Kembel SW (2007) Phylocom: Software for the analysis of community phylogenetic structure and trait evolution. Version 3.41. Webb SD (1969) Extinction-origination equilibria in late Cenozoic land mammals of North America. Evolution 23:688–702. Weir JT, Schluter D (2007) The latitudinal gradient in recent speciation and extinction rates of birds and mammals. Science 315:1574–1576. Weiss S, Ferrand N, eds (2007) Phylogeography of Southern European Refugia (Springer, Dordrecht, The Netherlands). Wen J (1999) Evolution of eastern Asian and eastern North American disjunct distributions in flowering plants. Annu Rev Ecol Syst 30:421–455. Weprin A (2007) Planet Earth Delivers for Discovery. Available at www.broadcastingcable.com/article/CA6428815.html. Accessed 6/28/08. Wertz S, et al. (2007) Decline of soil microbial diversity does not influence the resistance and resilience of key soil microbial functional groups following a model disturbance. Environ Microbiol 9:2211–2219. West GB, Brown JH, Enquist BJ (1997) A general model for the origin of allometric scaling laws in biology. Science 276:122–126. West JB, Bowen GJ, Cerling TE, Ehleringer JR (2006) Stable isotopes as one of nature’s ecological recorders. Trends Ecol Evol 21:408–414. Western D (1989) Conservation without parks: Wildlife in the rural landscape. In Conservation for the Twenty-First Century, eds Western D, Pearl MM (Oxford Univ Press, Oxford), pp 158–165. Western D, Wright MA (1994) Natural Connections: Perspectives in Community-Based Conservation (Island, Washington, DC).
OCR for page 393
In the Light of Evolution: Volume II—Biodiversity and Extinction White EP, Ernest SKM, Kerkhoff AJ, Enquist BJ (2007) Relationships between body size and abundance in ecology. Trends Ecol Evol 22:323–330. Whitman WB, Coleman DC, Wiebe WJ (1998) Prokaryotes: The unseen majority. Proc Natl Acad Sci USA 95:6578–6583. Whitmore TC (1980) The conservation of tropical rain forest. In Conservation Biology, eds Soulé ME, Wilcox BA (Sinauer, Sunderland, MA), pp 303–318. Whitmore TC, Sauer JA, eds (1992) Tropical Deforestation and Species Extinction (Chapman & Hall, London). Whittaker RH (1960) Vegetation of the Siskiyou Mountains, Oregon, and California. Ecol Monogr 30:279–338. Whittaker RH (1967) Gradient analysis of vegetation. Biol Rev 42:207–264. Wiens JJ (2004) Speciation and ecology revisited: Phylogenetic niche conservatism and the origin of species. Evolution 58:193–197. Wiens JJ (2007a) Global patterns of species richness and diversification in amphibians. Am Nat 170(Suppl):S86–S106. Wiens JJ (2007b) The dangers of black-and-white conservation. Conserv Biol 21:1371–1372. Wiens JJ, Donoghue MJ (2004) Historical biogeography, ecology, and species richness. Trends Ecol Evol 19:639–644. Wiens JJ, Graham CH (2005) Niche conservatism: Integrating evolution, ecology, and conservation biology. Annu Rev Ecol Evol Syst 36:519–539. Wiens JJ, Brandley MC, Reeder TW (2006) Why does a trait evolve multiple times within a clade? Repeated evolution of snake-like body form in squamate reptiles. Evolution 60:123–141. Wikstrom N, Savolainen V, Chase MW (2001) Evolution of the angiosperms: Calibrating the family tree. Proc R Soc London Ser B 268:2211–2220. Wilf P, Labandeira CC, Johnson KR, Ellis B (2006) Decoupled plant and insect diversity after the end-Cretaceous extinction. Science 313:1112–1115. Wilkinson C, ed (2004) Status of the Coral Reefs of the World (Australian Inst Mar Sci, Townsville), Vols 1 and 2. Williams JW, Jackson ST, Kurtzbach JE (2007) Projected distributions of novel and disappearing climates by 2100 AD. Proc Natl Acad Sci USA 104:5739–5742. Williams PA, Cameron EK (2006) Creating gardens: The diversity and progression of European plant introductions. In Biological Invasions of New Zealand, eds Allen RB, Lee WG (Springer, Berlin), pp 33–47. Williams P, et al. (1996) A comparison of richness hotspots, rarity hotspots, and complementary areas for conserving diversity of British birds. Conserv Biol 10:155–174. Wilson DE, Reeder DM (2005) Mammal Species of the World: A Taxonomic and Geographic Reference (Johns Hopkins Univ Press, Baltimore), 3rd Ed. Wilson EO (1984) Biophilia (Harvard Univ Press, Cambridge, MA). Wilson EO, ed (1988) Biodiversity (National Academy Press, Washington, DC). Wilson EO (1989) Threats to biodiversity. Sci Am 261:108–116. Wilson EO (1992) The Diversity of Life (Belknap Press of Harvard Univ Press, Cambridge, MA). Wilson EO (2002) The Future of Life (Knopf, New York). Wilson EO (2003) The encyclopedia of life. Trends Ecol Evol 18:77–80. Wilson EO, Peter FM, eds (1988) Biodiversity (Natl Acad Press, Washington, DC). Wilson KA, et al. (2007) Conserving biodiversity efficiently: What to do, where, and when. PLoS Biol 5:e223. Windsor DA (1995) Equal rights for parasites. Conserv Biol 9:1–2. Winfree R, Williams NM, Dushoff J, Kremen C (2007) Native bees provide insurance against ongoing honey bee losses. Ecol Lett 10:1105–1113.
OCR for page 394
In the Light of Evolution: Volume II—Biodiversity and Extinction Winkworth R, Lundberg J, Donoghue MJ (2008) Toward a resolution of campanulid phylogeny, with special reference to the placement of Dipsacales. Taxon 57:53-65. Wohl DL, Arora S, Gladstone JR (2004) Functional redundancy supports biodiversity and ecosystem function in a closed and constant environment. Ecology 85:1534–1540. Wolf EC, Cooper DJ, Hobbs NT (2007) Hydrologic regime and herbivory stabilize an alternative state in Yellowstone National Park. Ecol Appl 17:1572–1587. Wood R (1999) Reef Evolution (Oxford Univ Press, Oxford). Wood SN (2006) Generalized Additive Models: An Introduction with R (Chapman & Hall/CRC, Boca Raton, FL). Woodcock S, et al. (2006) Taxa-area relationships for microbes: The unsampled and the unseen. Ecol Lett 9:805–812. Woodhams DC, et al. (2007) Symbiotic bacteria contribute to innate immune defenses of the threatened mountain yellow-legged frog. Rana muscosa. Biol Conserv 138:390–398. Woodruff DS (2001) Declines of biomes and biotas and the future of evolution. Proc Natl Acad Sci USA 98:5471–5476. Worberg A, et al. (2007) Phylogeny of basal eudicots: Insights from noncoding and rapidly evolving DNA. Org Divers Evol 7:55–77. Worm B, Duffey JE (2003) Biodiversity, productivity, and stability in real food webs. Trends Ecol Evol 18:628–632. Worm B, et al. (2006) Impacts of biodiversity loss on ocean ecosystem services. Science 314:787–790. Wright SJ, Muller-Landau H (2006a) The future of tropical forest species. Biotropica 38:287–301. Wright SJ, Muller-Landau H (2006b) The uncertain future of tropical forest species. Biotropica 38:443–445. Wroe S, Field J (2006) A review of the evidence for a human role in the extinction of Australian megafauna and an alternative interpretation. Q Sci Rev 25:2692–2703. Xiang Q-Y, et al. (2004) Regional differences in speciation and ITS evolution: A comparison between eastern Asia and eastern North America. Evolution 58:2175–2184. Yazdanbakhsh M, Kremsner PG, van Ree R (2002) Allergy, parasites, and the hygiene hypothesis. Science 296:490–494. Young TP (2000) Restoration ecology and conservation biology. Biol Conserv 92:73–83. Young TP, Petersen DA, Clary JJ (2005) The ecology of restoration: Historical links, emerging issues and unexplored realms. Ecol Lett 8:662–673. Yurko M (2007). ROOTS: Upper Newport Bay Project. Community-Based Restoration and Education Program. http://www.coastal.ca.gov/publiced/UNBweb/restore.html. Zedler JB, Callaway JC (1999) Tracking wetland restoration: Do mitigation sites follow desired trajectories? Restor Ecol 7:69–73. Zhang B, Tang Q, Jin X (2007) Decadal-scale variations of trophic levels at high trophic levels in the Yellow Sea and the Bohai Sea ecosystem. J Mar Sys 67:304–311. Zimmermann AR, Canuel EA (2002) Sediment geochemical records of eutrophication in the mesohaline Chesapeake Bay. Limnol Oceanogr 47:1084–1093.