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Appendix B
Acronyms
AI autoinducer
AMD acid mine drainage
BLAST Basic Local Alignment Search Tool
BSE bovine spongiform encephalopathy
Bt Bacillus thuringiensis
CDC Centers for Disease Control and Prevention
CGEPs cellular genes exploited by pathogens
CISAC Committee on International Security and Arms Control
CPV canine parvovirus
CRISPR clustered regularly interspaced short palindromic repeat
DARPA Defense Advanced Research Projects Agency
DOE Department of Energy
DTRA Defense Threat Reduction Agency
EID emerging infectious disease
ESCRT endosomal sorting complexes required for transport
EST expressed sequence tag
FAO Food and Agriculture Organization
FASEB Federation of American Societies for Experimental Biology
FEMS Federation of European Microbiological Societies
FISH fluorescence in situ hybridization
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MICROBIAL EVOLUTION AND CO-ADAPTATION
FPV feline panleukopenia virus
GEBA Genomic Encyclopedia of Bacteria and Archaea
GI gastrointestinal
GSV gene search vector
HIV human immunodeficiency virus
HPS Hantavirus pulmonary syndrome
HPSD-18 Homeland Security Presidential Directive-18
HTLV human T-cell lymphoma virus
IDSA Infectious Diseases Society of America
IHR International Health Regulations
IOM Institute of Medicine
JAMA Journal of the American Medical Association
JID Journal of Infectious Diseases
LPS lipopolysaccharide
MAMP microbe-associated molecular pattern
MCP methyl-accepting chemotaxis protein
MDR multidrug resistant
MRSA methicillin-resistant Staphylococcus aureus
NAS National Academy of Sciences
NASA National Aeronautics and Space Administration
NCID National Center for Infectious Diseases
NIAID National Institute of Allergy and Infectious Diseases
NIH National Institutes of Health
NiV Nipah virus
NLM National Library of Medicine
NSF National Science Foundation
NTS non-typhoidal salmonellosis
OR odds ratio
ORF open reading frame
OSTP Office of Science and Technology Policy
PCR polymerase chain reaction
PGN peptidoglycan
PIGT proteomic-inferred genome typing
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APPENDIX B
ProMED Program for Monitoring Emerging Diseases
QS quorum sensing
RHKO random homozygous knockout
RSV Rous sarcoma virus
SARS severe acute respiratory syndrome
SNP single nucleotide polymorphism
TB tuberculosis
TIGR The Institute for Genomic Research
VISA vancomycin-intermediate Staphylococcus aureus
VRSA vancomycin-resistant Staphylococcus aureus
WHO World Health Organization
WNV West Nile virus
WWTP wastewater treatment plant
XDR extensively drug resistant
